rpoD protein (Bifidobacterium breve) - STRING interaction network

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Score

rpoD

RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (472 aa)

Predicted Functional Partners:

rpoB

0.993

rpoA

0.989

rpoC

0.987

rpoZ

0.983

RY69_1248

0.981

rbpA

0.980

RY69_1158

0.871

whiB-2

0.869

dnaG

0.830

RY69_1450

0.821

Your Current Organism:

Bifidobacterium breve

NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RY69_1158	rpoA	RY69_1158	RY69_164	Transcription activator, effector binding (Transcriptional regulator).	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.979
RY69_1158	rpoB	RY69_1158	RY69_1530	Transcription activator, effector binding (Transcriptional regulator).	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.907
RY69_1158	rpoC	RY69_1158	RY69_1529	Transcription activator, effector binding (Transcriptional regulator).	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.851
RY69_1158	rpoD	RY69_1158	RY69_633	Transcription activator, effector binding (Transcriptional regulator).	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.871
RY69_1158	rpoZ	RY69_1158	RY69_409	Transcription activator, effector binding (Transcriptional regulator).	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.851
RY69_1248	rbpA	RY69_1248	RY69_863	Transcriptional regulator, CarD family.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.	0.991
RY69_1248	rpoA	RY69_1248	RY69_164	Transcriptional regulator, CarD family.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.980
RY69_1248	rpoB	RY69_1248	RY69_1530	Transcriptional regulator, CarD family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.981
RY69_1248	rpoC	RY69_1248	RY69_1529	Transcriptional regulator, CarD family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.986
RY69_1248	rpoD	RY69_1248	RY69_633	Transcriptional regulator, CarD family.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.981
RY69_1248	rpoZ	RY69_1248	RY69_409	Transcriptional regulator, CarD family.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.980
RY69_1450	rpoA	RY69_1450	RY69_164	Ferric uptake regulator, Fur family; Belongs to the Fur family.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.972
RY69_1450	rpoB	RY69_1450	RY69_1530	Ferric uptake regulator, Fur family; Belongs to the Fur family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.748
RY69_1450	rpoC	RY69_1450	RY69_1529	Ferric uptake regulator, Fur family; Belongs to the Fur family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.748
RY69_1450	rpoD	RY69_1450	RY69_633	Ferric uptake regulator, Fur family; Belongs to the Fur family.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.821
RY69_1450	rpoZ	RY69_1450	RY69_409	Ferric uptake regulator, Fur family; Belongs to the Fur family.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.751
dnaG	rpoA	RY69_1479	RY69_164	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.406
dnaG	rpoB	RY69_1479	RY69_1530	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.813
dnaG	rpoC	RY69_1479	RY69_1529	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.846
dnaG	rpoD	RY69_1479	RY69_633	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.830

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