STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_642Type I phosphodiesterase / nucleotide pyrophosphatase family protein. (420 aa)    
Predicted Functional Partners:
RY69_1322
Hypothetical protein.
  
     0.698
RY69_2067
Putative integral membrane protein MviN.
 
     0.664
RY69_1324
Hypothetical protein.
  
     0.646
RY69_641
DNA gyrase subunit A.
       0.634
RY69_1863
DNA polymerase III, delta' subunit.
  
     0.623
RY69_91
DNA and RNA helicase-like protein.
  
    0.622
RY69_603
Hypothetical protein.
  
     0.533
RY69_2233
Hypothetical protein.
  
     0.525
RY69_2033
Glycosyl hydrolases family 31, Alpha-glucosidase or alpha-xylosidase.
   
  0.523
RY69_1797
Orotate phosphoribosyltransferase.
 
     0.519
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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