STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_681HipA-like C-terminal domain protein. (437 aa)    
Predicted Functional Partners:
RY69_58
Putative transcriptional regulator.
 
 
 
 0.807
RY69_1228
Putative helix-turn-helix protein.
 
 
 0.799
RY69_505
Putative transcriptional regulator.
  
    0.755
RY69_60
RelB antitoxin.
  
   
 0.747
RY69_1677
Transcriptional regulator, TetR family.
  
     0.712
RY69_1146
Macrolide-efflux protein, MFS member.
  
     0.701
crcB-4
CrcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
  
     0.674
RY69_1831
Putative membrane protein.
  
     0.673
RY69_269
Hypothetical protein.
  
     0.657
RY69_1647
Cation efflux family protein.
  
     0.635
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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