STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_705Magnesium transporter, CorA family. (316 aa)    
Predicted Functional Partners:
RY69_706
Putative solute binding protein of ABC transporter system.
  
   0.847
leuS
Leucine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.749
RY69_704
Phosphoglycerate mutase family protein.
       0.655
RY69_708
ComE operon protein 1.
       0.646
RY69_709
ComE operon protein 3.
       0.646
holA
DNA polymerase III, delta subunit.
       0.564
RY69_711
Hydrolase, P-loop family.
       0.541
yeaZ
Universal bacterial protein YeaZ.
 
     0.529
RY69_703
Methyltransferase.
       0.456
rimI
Putative ribosomal-protein-alanine N-acetyltransferase.
       0.405
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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