Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY69_706Putative solute binding protein of ABC transporter system. (293 aa)    
Predicted Functional Partners:
RY69_463
Glutamate transport system permease protein GluC.
 
 0.985
RY69_464
Glutamate transport system permease protein gluD.
 
 0.969
RY69_461
Glutamate transport ATP-binding protein.
 
 0.961
RY69_462
ABC transporter glutamine-binding protein GlnH; Belongs to the bacterial solute-binding protein 3 family.
  
  
 
0.914
RY69_705
Magnesium transporter, CorA family.
  
 
 0.820
leuS
Leucine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.736
RY69_1162
Glutamine ABC transporter, ATP-binding protein.
 
 
 0.717
RY69_1160
ABC transporter, permease protein.
 
 
 0.703
RY69_1503
L-cystine ABC transporter, ATP-binding protein.
 
 
 0.702
RY69_1161
Amino acid ABC transporter, permease protein.
 
 
 0.674
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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