STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY69_80Phosphate regulon sensor protein PhoR. (438 aa)    
Predicted Functional Partners:
RY69_81
Two-component response regulator PhoP.
 0.996
RY69_216
Sensor-like histidine kinase senX3.
 
0.934
RY69_446
DNA-binding response regulator PhoP.
 
 0.862
RY69_1250
DNA-binding response regulator MtrA.
 
 0.853
RY69_275
Two component transcriptional regulator, winged helix family.
 
 
 0.809
RY69_1778
Transcriptional regulatory protein glnR.
 
 
 0.760
RY69_2002
Putative cyclic diguanylate phosphodiesterase domain protein.
  
 
 0.737
RY69_2211
Periplasmic binding protein and sugar binding domain of the LacI family protein.
    
 
 0.561
RY69_606
Putative lipoprotein.
    
 
 0.561
RY69_1954
Peptidase S1 and S6, chymotrypsin/Hap.
  
 0.508
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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