Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RY69_838Abi-like protein. (210 aa)    
Predicted Functional Partners:
RY69_1054
SUF system FeS assembly protein, NifU family.
  
 0.958
RY69_590
Cysteine desulfurase.
  
 0.942
RY69_1027
Glutamate synthase [NADPH] small chain.
    
 0.683
RY69_1952
Putative NADPH-ferredoxin reductase FprA.
    
 0.683
RY69_2011
Thioredoxin reductase/Thioredoxin/Glutaredoxin family protein.
   
 
 0.640
trxB
Thioredoxin-disulfide reductase.
   
 
 0.627
RY69_647
Peptidyl-prolyl cis-trans isomerase.
  
   0.547
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
  
 
 0.506
RY69_1882
Putative hydrolase.
  
 
 0.423
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.409
Your Current Organism:
Bifidobacterium breve
NCBI taxonomy Id: 1685
Other names: AS 1.2213, ATCC 15700, B. breve, BCRC 11846, Bifidobacterium parvulorum, CCRC 11846, CCRC:11846, CCUG 18365, CCUG 30511 A, CIP 64.69, DSM 20213, HAMBI 558, LMG 11042, LMG:11042, NCAIM B.01820, NCFB 2257, NCIMB 702257, NCTC 11815
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