Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RY69_1190 | RY69_1990 | RY69_1190 | RY69_1990 | Ribonuclease D. | Hypothetical protein. | 0.431 |
| RY69_1190 | RY69_644 | RY69_1190 | RY69_644 | Ribonuclease D. | Hypothetical protein. | 0.521 |
| RY69_1190 | RY69_859 | RY69_1190 | RY69_859 | Ribonuclease D. | Transcriptional regulator, MerR family. | 0.519 |
| RY69_1190 | glnE | RY69_1190 | RY69_987 | Ribonuclease D. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.683 |
| RY69_1190 | rbpA | RY69_1190 | RY69_863 | Ribonuclease D. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.504 |
| RY69_1818 | RY69_1819 | RY69_1818 | RY69_1819 | Protein-pII. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.996 |
| RY69_1818 | glnA | RY69_1818 | RY69_1325 | Protein-pII. | Glutamine synthetase. | 0.679 |
| RY69_1818 | glnA-2 | RY69_1818 | RY69_529 | Protein-pII. | Glutamine synthetase, type I. | 0.675 |
| RY69_1818 | glnE | RY69_1818 | RY69_987 | Protein-pII. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.674 |
| RY69_1819 | RY69_1818 | RY69_1819 | RY69_1818 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Protein-pII. | 0.996 |
| RY69_1819 | glnA | RY69_1819 | RY69_1325 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamine synthetase. | 0.729 |
| RY69_1819 | glnA-2 | RY69_1819 | RY69_529 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamine synthetase, type I. | 0.727 |
| RY69_1819 | glnE | RY69_1819 | RY69_987 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.698 |
| RY69_1990 | RY69_1190 | RY69_1990 | RY69_1190 | Hypothetical protein. | Ribonuclease D. | 0.431 |
| RY69_1990 | RY69_644 | RY69_1990 | RY69_644 | Hypothetical protein. | Hypothetical protein. | 0.753 |
| RY69_1990 | RY69_859 | RY69_1990 | RY69_859 | Hypothetical protein. | Transcriptional regulator, MerR family. | 0.732 |
| RY69_1990 | crgA | RY69_1990 | RY69_1985 | Hypothetical protein. | Membrane protein; Involved in cell division; Belongs to the CrgA family. | 0.749 |
| RY69_1990 | glnE | RY69_1990 | RY69_987 | Hypothetical protein. | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] | 0.678 |
| RY69_1990 | rbpA | RY69_1990 | RY69_863 | Hypothetical protein. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.736 |
| RY69_644 | RY69_1190 | RY69_644 | RY69_1190 | Hypothetical protein. | Ribonuclease D. | 0.521 |
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