STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJRNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (248 aa)    
Predicted Functional Partners:
cysS
cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  0.757
rlmE
23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
   
 0.641
KUF10566.1
Nicotinamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.605
KUF09457.1
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.599
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
  
 0.583
KUF10228.1
Aspartyl-trna synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.494
KUF11573.1
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
KUF11574.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
dksA
RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
     0.463
KUF11613.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
Your Current Organism:
Ponticoccus marisrubri
NCBI taxonomy Id: 1685382
Other names: ACCC19863, JCM 19520, P. marisrubri, Ponticoccus marisrubri Zhang et al. 2017, Ponticoccus sp. SJ5A-1, strain SJ5A-1
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