evm_007661 protein (Chilo suppressalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

evm_007661

SOCS box domain-containing protein. (291 aa)

Predicted Functional Partners:

evm_009658

0.919

evm_005139

0.897

evm_007093

0.854

evm_009409

0.825

evm_011532

0.823

evm_009321

0.819

evm_008794

0.817

evm_008852

0.811

evm_009997

0.807

evm_008780

0.800

Your Current Organism:

Chilo suppressalis

NCBI taxonomy Id: 168631
Other names: Asiatic rice borer, C. suppressalis, Crambus suppressalis, striped rice borer, striped riceborer

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
evm_005139	evm_007093	A0A437BIN3	A0A437BCT9	Uncharacterized protein.	Uncharacterized protein.	0.888
evm_005139	evm_007661	A0A437BIN3	A0A3S2LIX9	Uncharacterized protein.	SOCS box domain-containing protein.	0.897
evm_005139	evm_008852	A0A437BIN3	A0A3S2LGZ7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.833
evm_005139	evm_009321	A0A437BIN3	A0A3S2PAM1	Uncharacterized protein.	Uncharacterized protein.	0.840
evm_007093	evm_005139	A0A437BCT9	A0A437BIN3	Uncharacterized protein.	Uncharacterized protein.	0.888
evm_007093	evm_007661	A0A437BCT9	A0A3S2LIX9	Uncharacterized protein.	SOCS box domain-containing protein.	0.854
evm_007093	evm_008852	A0A437BCT9	A0A3S2LGZ7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.874
evm_007093	evm_009321	A0A437BCT9	A0A3S2PAM1	Uncharacterized protein.	Uncharacterized protein.	0.855
evm_007661	evm_005139	A0A3S2LIX9	A0A437BIN3	SOCS box domain-containing protein.	Uncharacterized protein.	0.897
evm_007661	evm_007093	A0A3S2LIX9	A0A437BCT9	SOCS box domain-containing protein.	Uncharacterized protein.	0.854
evm_007661	evm_008780	A0A3S2LIX9	A0A3S2LH57	SOCS box domain-containing protein.	Uncharacterized protein.	0.800
evm_007661	evm_008794	A0A3S2LIX9	A0A3S2NRA8	SOCS box domain-containing protein.	Uncharacterized protein.	0.817
evm_007661	evm_008852	A0A3S2LIX9	A0A3S2LGZ7	SOCS box domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.811
evm_007661	evm_009321	A0A3S2LIX9	A0A3S2PAM1	SOCS box domain-containing protein.	Uncharacterized protein.	0.819
evm_007661	evm_009409	A0A3S2LIX9	A0A3S2LX13	SOCS box domain-containing protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.825
evm_007661	evm_009658	A0A3S2LIX9	A0A437B5F8	SOCS box domain-containing protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.919
evm_007661	evm_009997	A0A3S2LIX9	A0A3S2N9X2	SOCS box domain-containing protein.	Uncharacterized protein.	0.807
evm_007661	evm_011532	A0A3S2LIX9	A0A3S2N7V2	SOCS box domain-containing protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.823
evm_008780	evm_007661	A0A3S2LH57	A0A3S2LIX9	Uncharacterized protein.	SOCS box domain-containing protein.	0.800
evm_008794	evm_007661	A0A3S2NRA8	A0A3S2LIX9	Uncharacterized protein.	SOCS box domain-containing protein.	0.817