STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0060ABC transporter ATP-binding protein. (244 aa)    
Predicted Functional Partners:
BCOR_1367
Putative ABC transporter, permease protein.
  
 
 0.935
BCOR_0061
ABC transporter inner membrane protein.
  
   0.867
BCOR_1151
ABC transporter ATP-binding protein.
     
0.605
BCOR_0192
ABC transporter permease.
  
   0.599
BCOR_0064
ABC transporter; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
 
  
0.571
BCOR_0065
Efflux ABC transporter, permease protein.
  
   0.564
BCOR_1387
Permease of ABC transporter.
 
   0.557
BCOR_0660
ABC transporter ATP-binding protein.
 
    
0.549
pheS
phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.539
BCOR_0996
AAA family ATPase with putative Homeodomain-like domain.
  
     0.522
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.