STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0216Iron dependent repressor. (238 aa)    
Predicted Functional Partners:
mntH
Mn2+ and Fe2+ transporter of the NRAMP family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
 
  
 0.714
metN
D-methionine ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.701
BCOR_0709
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
 
 0.481
BCOR_0133
Sir2-type regulatory protein.
   
    0.461
BCOR_0797
Metal ABC transporter permease.
  
  
 0.448
BCOR_0811
Cell envelope-related transcriptional attenuator.
   
    0.443
BCOR_0758
ABC-type transport system protein.
     
 0.438
BCOR_1015
ABC transporter solute-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.435
BCOR_0796
Metals ABC transporter substrate-binding protein.
  
  
 0.427
BCOR_0735
Glutamate synthase large chain GltB.
       0.414
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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