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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0245NADH dehydrogenase, FAD-containing subunit. (391 aa)    
Predicted Functional Partners:
BCOR_0247
CydB, cytochrome D ubiquinol oxidase subunit II.
 
   
 0.900
BCOR_0246
CydA, cytochrome D ubiquinol oxidase subunit I.
 
   
 0.896
BCOR_0249
CydD, cytochrome bd biosynthesis ABC-type transporter, ATPase and permease component.
 
   
 0.872
BCOR_0248
ATP-binding cassette, subfamily C, bacterial CydD; CydC, cytochrome D ABC superfamily ATP binding cassette transporter, ATP-binding and permease protein.
 
     0.839
BCOR_0250
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.726
BCOR_0735
Glutamate synthase large chain GltB.
      
 0.626
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.561
gpmA-2
Phosphoglycerate mutase 1 family protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.561
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
 0.481
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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