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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0336NADH-dependent flavin oxidoreductase BaiC. (388 aa)    
Predicted Functional Partners:
BCOR_0337
Glycosyltransferase.
       0.718
BCOR_0335
Penicillin-binding protein Pbp.
       0.682
BCOR_0334
Transcription regulator, crp family.
  
    0.634
BCOR_0333
Lipoate-protein ligase A.
       0.571
BCOR_0799
CarD family transcriptional regulator.
   
    0.515
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.479
BCOR_0927
Cold shock protein.
   
    0.477
BCOR_0794
30S ribosomal protein S1.
   
    0.476
BCOR_0338
DeoR family transcriptional regulator.
       0.449
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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