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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0340Galactokinase; Belongs to the GHMP kinase family. GalK subfamily. (419 aa)    
Predicted Functional Partners:
BCOR_0339
Galactose-1-phosphate uridylyltransferase.
 0.999
BCOR_0482
Aldose 1-epimerase family protein.
 
 0.979
BCOR_1088
UDP-glucose 4-epimerase.
 
 
 0.951
BCOR_0567
NAD-dependent oxidoreductase.
 
 
 0.757
BCOR_0338
DeoR family transcriptional regulator.
 
   
 0.684
BCOR_0341
ACT domain protein; Belongs to the UPF0237 family.
       0.675
BCOR_0342
Hypothetical protein.
       0.667
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
      
 0.663
BCOR_0470
Xylulose kinase.
  
  
 0.641
BCOR_0125
Alpha-galactosidase.
 
  
 0.600
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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