STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BCOR_0355ATP-dependent DNA helicase, UvrD/REP family; Belongs to the helicase family. UvrD subfamily. (1391 aa)    
Predicted Functional Partners:
BCOR_0412
DNA helicaseII-like protein.
  
  
 0.973
BCOR_0354
Putative ATP-dependent DNA helicase, UvrD/REP family.
 
   
 0.963
BCOR_0776
ATP-dependent DNA helicase PcrA.
  
  
0.927
BCOR_0356
Acetyltransferase, GNAT family.
 
    0.750
BCOR_0038
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.724
BCOR_0357
Major facilitator superfamily MFS 1 domain.
 
     0.696
BCOR_0024
Hypothetical protein.
  
     0.674
BCOR_1209
FHA domain protein.
  
     0.644
BCOR_0604
DNA polymerase III, delta subunit.
 
   
 0.627
BCOR_0948
Primosomal protein PriA.
 
    0.618
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.