STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ldhL-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (320 aa)    
Predicted Functional Partners:
BCOR_0790
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.985
BCOR_1240
Aspartate aminotransferase.
  
 0.945
BCOR_0613
Isocitrate dehydrogenase IcdA; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.932
BCOR_1054
Citrate synthase; Belongs to the citrate synthase family.
  
 0.929
BCOR_0575
Formate acetyltransferase.
   
 
 0.920
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.904
BCOR_0520
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 0.882
BCOR_0283
Acetolactate synthase large subunit.
  
 0.878
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 0.867
BCOR_0740
Branched-chain amino acid aminotransferase.
  
 0.856
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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