Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BCOR_0499Sensor histidine kinase. (479 aa)    
Predicted Functional Partners:
BCOR_0498
Response regulator.
 
 0.997
BCOR_0923
Two-component response regulator.
 
 
 0.886
BCOR_0800
Two-component response regulator.
 
 
 0.867
BCOR_0497
Bacteriocin ABC transporter.
 
     0.841
BCOR_0496
Lantibiotic protection ABC transporter, permease subunit, MutE/EpiE family.
 
     0.837
xerD
Integrase/recombinase (XerD/RipX family); Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
  
 0.768
BCOR_1098
Sensor-like histidine kinase.
 
 
 0.761
BCOR_0922
Two component system histidine kinase.
 
 
 
 0.746
BCOR_1286
Transcriptional regulatory protein.
 
 
 0.741
BCOR_0518
Cation-transporting ATPase.
    
 
 0.740
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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