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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0499Sensor histidine kinase. (479 aa)    
Predicted Functional Partners:
BCOR_0498
Response regulator.
 
 0.998
BCOR_0923
Two-component response regulator.
 
 
 0.915
BCOR_0800
Two-component response regulator.
 
 
 0.901
BCOR_0497
Bacteriocin ABC transporter.
 
     0.842
BCOR_0496
Lantibiotic protection ABC transporter, permease subunit, MutE/EpiE family.
 
     0.838
BCOR_1286
Transcriptional regulatory protein.
 
 
 0.806
xerD
Integrase/recombinase (XerD/RipX family); Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
  
 0.769
BCOR_0518
Cation-transporting ATPase.
    
 
 0.767
BCOR_1098
Sensor-like histidine kinase.
 
 
 0.766
BCOR_0922
Two component system histidine kinase.
 
 
 0.754
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.