STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0510Oligopeptide-binding protein oppA. (564 aa)    
Predicted Functional Partners:
BCOR_0512
Oligopeptide transport system permease protein oppB.
 
 0.995
BCOR_0513
Oligopeptide transport system permease protein oppC.
 
 
 0.987
BCOR_0514
Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
 
 0.987
BCOR_0511
Oligopeptide-binding protein oppA.
 
  
 
0.948
BCOR_1072
Solute binding protein of ABC transporter system for peptides.
  
  
 
0.914
BCOR_1037
Solute-binding protein of ABC transporter system for peptides.
 
 
 0.849
BCOR_1036
Solute-binding protein of ABC transporter system for peptides.
 
  
 0.622
BCOR_1288
Solute binding protein of ABC transporter system for peptides.
 
  
 0.569
BCOR_1035
ATP-binding protein of ABC transporter system for peptides.
 
 
 0.543
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.510
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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