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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0517tRNA (Uracil-5-) -methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (425 aa)    
Predicted Functional Partners:
BCOR_0515
Hypothetical protein.
       0.769
BCOR_0516
Hypothetical protein.
       0.769
BCOR_0514
Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
       0.666
BCOR_0513
Oligopeptide transport system permease protein oppC.
       0.665
BCOR_0518
Cation-transporting ATPase.
       0.660
BCOR_0519
Cation-transporting ATPase.
       0.649
BCOR_0520
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.587
BCOR_0583
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
    0.580
rsmI
Uroporphyrin-III C/tetrapyrrole; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.539
BCOR_0512
Oligopeptide transport system permease protein oppB.
       0.538
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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