STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0561DEAD box-like helicase. (876 aa)    
Predicted Functional Partners:
BCOR_0559
Glutamate transport system permease protein GluC.
       0.641
BCOR_0560
Glutamate transport system permease protein gluD.
       0.641
BCOR_0558
Glutamate-binding protein gluB; Belongs to the bacterial solute-binding protein 3 family.
       0.640
BCOR_0595
Hypothetical protein.
 
     0.600
BCOR_0557
Glutamate transport ATP-binding protein gluA.
       0.492
BCOR_0269
RCC1 repeat-containing protein.
  
     0.476
BCOR_0184
RCC1 repeat-containing protein.
  
     0.464
BCOR_0195
RCC1 repeat-containing protein.
  
     0.463
BCOR_0320
Regulator of chromosome condensation RCC1.
  
     0.457
BCOR_0523
RCC1 repeat-containing protein.
  
     0.456
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.