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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0571TetR family transcriptional regulator. (242 aa)    
Predicted Functional Partners:
BCOR_0570
Hypothetical protein.
       0.806
BCOR_1367
Putative ABC transporter, permease protein.
 
  
 0.595
BCOR_0134
Sugar ABC transporter substrate-binding protein.
  
     0.545
BCOR_0962
Hypothetical protein.
  
     0.534
BCOR_0390
Activator of 2-hydroxyglutaryl-CoA dehydratase.
     
 0.532
BCOR_0569
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
    0.531
BCOR_1110
Hydrolase of the alpha/beta superfamily.
  
     0.528
BCOR_0567
NAD-dependent oxidoreductase.
       0.508
BCOR_0568
Type II vsr-like G/T DNA mismatch repair endonuclease of unknown recognition sequence; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.508
BCOR_1337
Pilus assembly protein, probably tadB.
  
     0.457
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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