tsaD protein (Bifidobacterium coryneforme) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tsaD

O-sialoglycoprotein endopeptidase Gcp; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (347 aa)

Predicted Functional Partners:

BCOR_0606

0.999

BCOR_0605

0.998

BCOR_0013

0.978

BCOR_0607

0.960

BCOR_0604

0.852

BCOR_0603

0.806

BCOR_1066

0.721

leuS

0.700

pheT

0.685

BCOR_0602

0.611

Your Current Organism:

Bifidobacterium coryneforme

NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCOR_0013	tsaD	BCOR_0013	BCOR_0608	Lipopolysaccharide kinase.	O-sialoglycoprotein endopeptidase Gcp; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.978
BCOR_0602	BCOR_0603	BCOR_0602	BCOR_0603	ComE operon protein 1.	ComE operon protein 3.	0.727
BCOR_0602	BCOR_0604	BCOR_0602	BCOR_0604	ComE operon protein 1.	DNA polymerase III, delta subunit.	0.611
BCOR_0602	BCOR_0605	BCOR_0602	BCOR_0605	ComE operon protein 1.	Hypothetical protein.	0.661
BCOR_0602	BCOR_0606	BCOR_0602	BCOR_0606	ComE operon protein 1.	Glycoprotease protein family.	0.611
BCOR_0602	BCOR_0607	BCOR_0602	BCOR_0607	ComE operon protein 1.	Acetyltransferase.	0.615
BCOR_0602	leuS	BCOR_0602	BCOR_0601	ComE operon protein 1.	leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.696
BCOR_0602	tsaD	BCOR_0602	BCOR_0608	ComE operon protein 1.	O-sialoglycoprotein endopeptidase Gcp; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.611
BCOR_0603	BCOR_0602	BCOR_0603	BCOR_0602	ComE operon protein 3.	ComE operon protein 1.	0.727
BCOR_0603	BCOR_0604	BCOR_0603	BCOR_0604	ComE operon protein 3.	DNA polymerase III, delta subunit.	0.808
BCOR_0603	BCOR_0605	BCOR_0603	BCOR_0605	ComE operon protein 3.	Hypothetical protein.	0.773
BCOR_0603	BCOR_0606	BCOR_0603	BCOR_0606	ComE operon protein 3.	Glycoprotease protein family.	0.773
BCOR_0603	BCOR_0607	BCOR_0603	BCOR_0607	ComE operon protein 3.	Acetyltransferase.	0.773
BCOR_0603	leuS	BCOR_0603	BCOR_0601	ComE operon protein 3.	leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.578
BCOR_0603	pheT	BCOR_0603	BCOR_0893	ComE operon protein 3.	phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.439
BCOR_0603	tsaD	BCOR_0603	BCOR_0608	ComE operon protein 3.	O-sialoglycoprotein endopeptidase Gcp; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.806
BCOR_0604	BCOR_0602	BCOR_0604	BCOR_0602	DNA polymerase III, delta subunit.	ComE operon protein 1.	0.611
BCOR_0604	BCOR_0603	BCOR_0604	BCOR_0603	DNA polymerase III, delta subunit.	ComE operon protein 3.	0.808
BCOR_0604	BCOR_0605	BCOR_0604	BCOR_0605	DNA polymerase III, delta subunit.	Hypothetical protein.	0.852
BCOR_0604	BCOR_0606	BCOR_0604	BCOR_0606	DNA polymerase III, delta subunit.	Glycoprotease protein family.	0.856

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About