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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0669MIP family major intrinsic protein channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (377 aa)    
Predicted Functional Partners:
BCOR_0334
Transcription regulator, crp family.
 
 
 0.707
cmk
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily.
  
    0.702
BCOR_0097
Pp2c Protein phosphatase 2C.
  
 
   0.700
BCOR_0668
Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
       0.696
BCOR_0686
Hypothetical protein.
  
  
 0.576
BCOR_0569
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.530
BCOR_1344
Glycerophosphoryl diester phosphodiesterase.
  
 
 0.521
BCOR_1115
Haloacid dehalogenase-like hydrolase (HAD superfamily).
  
   0.520
BCOR_0290
Oxidoreductase.
   
   0.515
BCOR_0404
Oxidoreductase, aldo/keto reductase family protein.
   
   0.515
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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