STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0724ABC transporter ATP-binding protein. (279 aa)    
Predicted Functional Partners:
BCOR_0720
Putative ribose transporter permease RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.988
BCOR_0721
Ribose transport ATP-binding protein RbsA.
 
  
 
0.949
BCOR_0723
ROK family transcriptional regulator.
 
    0.870
BCOR_0722
Sugar ABC superfamily ATP binding cassette transporter, binding protein.
 
  
 0.843
BCOR_0725
Hypothetical protein.
       0.825
BCOR_0518
Cation-transporting ATPase.
  
 
 0.724
pheS
phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
  
 
   0.456
BCOR_0191
ABC-type sugar transport system.
  
     0.423
BCOR_0719
Hypothetical protein.
       0.407
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.