Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BCOR_0231 | BCOR_0948 | BCOR_0231 | BCOR_0948 | Single-strand DNA-binding protein. | Primosomal protein PriA. | 0.671 |
BCOR_0231 | BCOR_0984 | BCOR_0231 | BCOR_0984 | Single-strand DNA-binding protein. | Phage-related single-strand binding protein. | 0.902 |
BCOR_0231 | BCOR_1059 | BCOR_0231 | BCOR_1059 | Single-strand DNA-binding protein. | Single-strand binding family protein. | 0.900 |
BCOR_0354 | BCOR_0920 | BCOR_0354 | BCOR_0920 | Putative ATP-dependent DNA helicase, UvrD/REP family. | Hypothetical protein. | 0.571 |
BCOR_0354 | BCOR_0948 | BCOR_0354 | BCOR_0948 | Putative ATP-dependent DNA helicase, UvrD/REP family. | Primosomal protein PriA. | 0.672 |
BCOR_0354 | BCOR_1059 | BCOR_0354 | BCOR_1059 | Putative ATP-dependent DNA helicase, UvrD/REP family. | Single-strand binding family protein. | 0.404 |
BCOR_0920 | BCOR_0354 | BCOR_0920 | BCOR_0354 | Hypothetical protein. | Putative ATP-dependent DNA helicase, UvrD/REP family. | 0.571 |
BCOR_0920 | BCOR_0948 | BCOR_0920 | BCOR_0948 | Hypothetical protein. | Primosomal protein PriA. | 0.689 |
BCOR_0920 | BCOR_1059 | BCOR_0920 | BCOR_1059 | Hypothetical protein. | Single-strand binding family protein. | 0.427 |
BCOR_0920 | rpoZ | BCOR_0920 | BCOR_0950 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.704 |
BCOR_0920 | whiA | BCOR_0920 | BCOR_0698 | Hypothetical protein. | Putative sporulation factor WhiA; Involved in cell division and chromosome segregation. | 0.434 |
BCOR_0947 | BCOR_0948 | BCOR_0947 | BCOR_0948 | Haloacid dehalogenase-like hydrolase (HAD superfamily). | Primosomal protein PriA. | 0.738 |
BCOR_0947 | fmt | BCOR_0947 | BCOR_0946 | Haloacid dehalogenase-like hydrolase (HAD superfamily). | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.739 |
BCOR_0947 | metK | BCOR_0947 | BCOR_0949 | Haloacid dehalogenase-like hydrolase (HAD superfamily). | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.600 |
BCOR_0947 | rpoZ | BCOR_0947 | BCOR_0950 | Haloacid dehalogenase-like hydrolase (HAD superfamily). | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.539 |
BCOR_0948 | BCOR_0231 | BCOR_0948 | BCOR_0231 | Primosomal protein PriA. | Single-strand DNA-binding protein. | 0.671 |
BCOR_0948 | BCOR_0354 | BCOR_0948 | BCOR_0354 | Primosomal protein PriA. | Putative ATP-dependent DNA helicase, UvrD/REP family. | 0.672 |
BCOR_0948 | BCOR_0920 | BCOR_0948 | BCOR_0920 | Primosomal protein PriA. | Hypothetical protein. | 0.689 |
BCOR_0948 | BCOR_0947 | BCOR_0948 | BCOR_0947 | Primosomal protein PriA. | Haloacid dehalogenase-like hydrolase (HAD superfamily). | 0.738 |
BCOR_0948 | BCOR_0984 | BCOR_0948 | BCOR_0984 | Primosomal protein PriA. | Phage-related single-strand binding protein. | 0.671 |
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