STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_0967Lysin, N-acetylmuramoyl-L-alanine amidase. (324 aa)    
Predicted Functional Partners:
BCOR_0966
Putative Holin.
       0.743
BCOR_0968
Hypothetical protein.
       0.574
BCOR_0974
Phage tail tape measure protein.
 
     0.567
BCOR_0965
Bacteriophage peptidoglycan hydrolase.
       0.566
BCOR_0969
Hypothetical protein.
       0.445
BCOR_0970
Phage tail fiber protein.
       0.436
BCOR_0971
Hypothetical protein.
       0.436
BCOR_0972
Hypothetical protein.
       0.436
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.