STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_1040Beta-galactosidase. (702 aa)    
Predicted Functional Partners:
BCOR_0125
Alpha-galactosidase.
 
  
 0.971
BCOR_0138
Alpha-galactosidase.
 
  
 0.967
BCOR_0395
Beta-galactosidase.
  
  
 
0.928
BCOR_0482
Aldose 1-epimerase family protein.
  
 
 0.908
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
   
 
  0.900
BCOR_1041
Ribosomal large subunit pseudouridine synthase D.
       0.554
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.539
BCOR_0054
Extracellular solute-binding protein.
 
     0.522
BCOR_0873
AglL Glycosyl hydrolases family 31, Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.481
BCOR_0053
alpha-L-arabinofuranosidase.
 
  
 0.424
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.