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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_1072Solute binding protein of ABC transporter system for peptides. (542 aa)    
Predicted Functional Partners:
BCOR_0512
Oligopeptide transport system permease protein oppB.
 
 
 0.984
BCOR_0513
Oligopeptide transport system permease protein oppC.
 
 
 0.982
BCOR_0510
Oligopeptide-binding protein oppA.
  
  
 
0.914
BCOR_0511
Oligopeptide-binding protein oppA.
  
  
 
0.906
BCOR_0514
Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
 
  
 0.767
BCOR_1037
Solute-binding protein of ABC transporter system for peptides.
 
  
 0.704
BCOR_1036
Solute-binding protein of ABC transporter system for peptides.
 
  
 0.685
BCOR_1073
Permease protein of ABC transporter system.
 
     0.614
BCOR_1288
Solute binding protein of ABC transporter system for peptides.
 
 
0.532
BCOR_1038
Peptide ABC transporter substrate-binding protein.
 
 
0.502
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.