BCOR_1074 protein (Bifidobacterium coryneforme)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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Score

BCOR_1074

ABC transporter, ATP-binding protein. (558 aa)

Predicted Functional Partners:

BCOR_1075

0.756

rplW

0.748

rplU

0.732

rpsC

0.731

rpsO

0.727

rplM

0.724

rpmD

0.721

rpmH

0.720

rplT

0.720

rpsS

0.717

Your Current Organism:

Bifidobacterium coryneforme

NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCOR_1074	BCOR_1075	BCOR_1074	BCOR_1075	ABC transporter, ATP-binding protein.	acyl-CoA thioesterase.	0.756
BCOR_1074	rplM	BCOR_1074	BCOR_1178	ABC transporter, ATP-binding protein.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.724
BCOR_1074	rplT	BCOR_1074	BCOR_0494	ABC transporter, ATP-binding protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.720
BCOR_1074	rplU	BCOR_1074	BCOR_1244	ABC transporter, ATP-binding protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.732
BCOR_1074	rplW	BCOR_1074	BCOR_1172	ABC transporter, ATP-binding protein.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.748
BCOR_1074	rpmD	BCOR_1074	BCOR_1156	ABC transporter, ATP-binding protein.	50S ribosomal protein L30.	0.721
BCOR_1074	rpmH	BCOR_1074	BCOR_0036	ABC transporter, ATP-binding protein.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.720
BCOR_1074	rpsC	BCOR_1074	BCOR_1168	ABC transporter, ATP-binding protein.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.731
BCOR_1074	rpsO	BCOR_1074	BCOR_1231	ABC transporter, ATP-binding protein.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.727
BCOR_1074	rpsS	BCOR_1074	BCOR_1170	ABC transporter, ATP-binding protein.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.717
BCOR_1075	BCOR_1074	BCOR_1075	BCOR_1074	acyl-CoA thioesterase.	ABC transporter, ATP-binding protein.	0.756
rplM	BCOR_1074	BCOR_1178	BCOR_1074	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	ABC transporter, ATP-binding protein.	0.724
rplM	rplT	BCOR_1178	BCOR_0494	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
rplM	rplU	BCOR_1178	BCOR_1244	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplM	rplW	BCOR_1178	BCOR_1172	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.997
rplM	rpmD	BCOR_1178	BCOR_1156	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L30.	0.990
rplM	rpmH	BCOR_1178	BCOR_0036	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.982
rplM	rpsC	BCOR_1178	BCOR_1168	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.995
rplM	rpsO	BCOR_1178	BCOR_1231	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.984
rplM	rpsS	BCOR_1178	BCOR_1170	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.996

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