Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_1109Hypothetical protein. (214 aa)    
Predicted Functional Partners:
BCOR_1108
Tetratricopeptide TPR_2 repeat protein.
     0.982
BCOR_1110
Hydrolase of the alpha/beta superfamily.
       0.700
BCOR_1235
Hypothetical protein.
  
     0.695
BCOR_1209
FHA domain protein.
  
     0.680
BCOR_1320
Hypothetical protein.
  
     0.671
BCOR_0354
Putative ATP-dependent DNA helicase, UvrD/REP family.
  
     0.608
BCOR_0937
Hypothetical protein.
  
     0.580
BCOR_0251
Ser/Thr protein phosphatase family protein.
  
     0.559
BCOR_0808
Hypothetical protein.
  
     0.555
BCOR_0807
Hypothetical protein.
  
     0.541
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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