STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
BCOR_1214Putative alpha-L-rhamnosidase. (931 aa)    
Predicted Functional Partners:
BCOR_0165
Beta-glucosidase, cellodextrinase, glycosyl hydrolase family 1; Belongs to the glycosyl hydrolase 1 family.
  
 
 0.911
BCOR_0051
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
    
  0.902
BCOR_0052
Beta-glucosidase.
    
  0.902
BCOR_0396
Beta-glucosidase.
    
  0.902
BCOR_0910
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
    
  0.902
BCOR_1215
Hypothetical protein.
       0.773
BCOR_1216
ABC transporter, permease protein.
       0.513
BCOR_1217
ABC transporter, permease protein.
       0.513
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
   0.486
BCOR_1211
O-glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
  
 0.460
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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