STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_1367Putative ABC transporter, permease protein. (674 aa)    
Predicted Functional Partners:
BCOR_1368
ABC superfamily ATP binding cassette transporter, ABC protein.
  
 
 0.984
BCOR_0064
ABC transporter; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
 
 0.957
BCOR_0060
ABC transporter ATP-binding protein.
  
 
 0.935
BCOR_0066
ABC transporter, ATP-binding protein.
  
 
 0.935
BCOR_0191
ABC-type sugar transport system.
  
 
 0.935
BCOR_1386
ATP-binding protein of ABC transporter system.
  
 
 0.935
BCOR_1369
ABC-2 type transporter.
 
  
 0.723
msrA
Peptide methionine sulfoxide reductase MsrA/MsrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.647
BCOR_0571
TetR family transcriptional regulator.
 
   
 0.566
BCOR_1113
Histidine kinase sensor of two component system.
 
   0.537
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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