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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCOR_1368ABC superfamily ATP binding cassette transporter, ABC protein. (246 aa)    
Predicted Functional Partners:
BCOR_1367
Putative ABC transporter, permease protein.
  
 
 0.999
BCOR_1034
ATP-binding protein of ABC transporter system for peptides.
 
   
0.803
BCOR_0192
ABC transporter permease.
  
   0.722
BCOR_1387
Permease of ABC transporter.
 
   0.692
BCOR_1388
Permease protein of ABC transporter system.
 
   0.624
BCOR_0065
Efflux ABC transporter, permease protein.
  
   0.618
BCOR_1370
ABC transporter.
   
0.593
BCOR_0064
ABC transporter; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
 
  
0.587
BCOR_0061
ABC transporter inner membrane protein.
  
   0.568
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.482
Your Current Organism:
Bifidobacterium coryneforme
NCBI taxonomy Id: 1687
Other names: AS 1.2279, ATCC 25911, B. coryneforme, BCRC 14675, Bifidobacterium sp. Bma6, CCRC 14675, CCRC:14675, CCUG 34986, DSM 20216, JCM 5819, LMG 18911, LMG:18911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.