STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldhL-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (320 aa)    
Predicted Functional Partners:
BCUN_0324
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.989
BCUN_2205
Citrate synthase 1; Belongs to the citrate synthase family.
  
 0.961
BCUN_0170
Formate acetyltransferase.
   
 
 0.948
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.943
BCUN_0510
Transketolase; Belongs to the transketolase family.
   
 0.933
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
   
 0.931
BCUN_0462
Glutamate synthase.
  
 
 0.929
BCUN_1108
Aspartate transaminase.
  
 0.929
BCUN_1202
L-lactate dehydrogenase 1; Belongs to the LDH/MDH superfamily.
  
  
 
0.922
BCUN_1160
Acetolactate synthase small subunit.
   
 0.913
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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