STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_0157Type I phosphodiesterase/nucleotide pyrophosphatase. (421 aa)    
Predicted Functional Partners:
BCUN_0156
DNA topoisomerase IV subunit A.
 
     0.741
BCUN_1427
Integral membrane protein MviN.
 
     0.690
BCUN_1280
Glycosyltransferase.
   
 
 0.659
BCUN_0917
Putative integral membrane protein.
  
     0.653
BCUN_1743
Orotate phosphoribosyltransferase.
 
  
  0.613
BCUN_0915
Putative transporter (sulfate transport family).
  
     0.612
BCUN_1553
Diacylglycerol kinase catalytic domain protein.
  
 
  0.562
BCUN_1227
Superfamily I DNA and RNA helicase.
  
     0.546
BCUN_1024
ATP-binding protein.
  
     0.531
BCUN_1073
Thymidine phosphorylase.
  
     0.524
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.