Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BCUN_0188 | BCUN_0189 | BCUN_0188 | BCUN_0189 | Succinate dehydrogenase iron-sulfur protein. | Succinate dehydrogenase flavoprotein subunit. | 0.999 |
BCUN_0188 | BCUN_0285 | BCUN_0188 | BCUN_0285 | Succinate dehydrogenase iron-sulfur protein. | Aspartate ammonia-lyase. | 0.508 |
BCUN_0188 | BCUN_0508 | BCUN_0188 | BCUN_0508 | Succinate dehydrogenase iron-sulfur protein. | Bifunctional HTH-domain containing protein/aminotransferase. | 0.904 |
BCUN_0188 | BCUN_1108 | BCUN_0188 | BCUN_1108 | Succinate dehydrogenase iron-sulfur protein. | Aspartate transaminase. | 0.897 |
BCUN_0188 | BCUN_1357 | BCUN_0188 | BCUN_1357 | Succinate dehydrogenase iron-sulfur protein. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.922 |
BCUN_0188 | BCUN_2205 | BCUN_0188 | BCUN_2205 | Succinate dehydrogenase iron-sulfur protein. | Citrate synthase 1; Belongs to the citrate synthase family. | 0.912 |
BCUN_0188 | argH | BCUN_0188 | BCUN_0945 | Succinate dehydrogenase iron-sulfur protein. | Argininosuccinate lyase. | 0.904 |
BCUN_0188 | sucC | BCUN_0188 | BCUN_0803 | Succinate dehydrogenase iron-sulfur protein. | succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.989 |
BCUN_0188 | sucD | BCUN_0188 | BCUN_0802 | Succinate dehydrogenase iron-sulfur protein. | succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.992 |
BCUN_0189 | BCUN_0188 | BCUN_0189 | BCUN_0188 | Succinate dehydrogenase flavoprotein subunit. | Succinate dehydrogenase iron-sulfur protein. | 0.999 |
BCUN_0189 | BCUN_0285 | BCUN_0189 | BCUN_0285 | Succinate dehydrogenase flavoprotein subunit. | Aspartate ammonia-lyase. | 0.962 |
BCUN_0189 | BCUN_0508 | BCUN_0189 | BCUN_0508 | Succinate dehydrogenase flavoprotein subunit. | Bifunctional HTH-domain containing protein/aminotransferase. | 0.906 |
BCUN_0189 | BCUN_1108 | BCUN_0189 | BCUN_1108 | Succinate dehydrogenase flavoprotein subunit. | Aspartate transaminase. | 0.897 |
BCUN_0189 | BCUN_1238 | BCUN_0189 | BCUN_1238 | Succinate dehydrogenase flavoprotein subunit. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.938 |
BCUN_0189 | BCUN_1357 | BCUN_0189 | BCUN_1357 | Succinate dehydrogenase flavoprotein subunit. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.941 |
BCUN_0189 | BCUN_2205 | BCUN_0189 | BCUN_2205 | Succinate dehydrogenase flavoprotein subunit. | Citrate synthase 1; Belongs to the citrate synthase family. | 0.951 |
BCUN_0189 | argH | BCUN_0189 | BCUN_0945 | Succinate dehydrogenase flavoprotein subunit. | Argininosuccinate lyase. | 0.901 |
BCUN_0189 | sucC | BCUN_0189 | BCUN_0803 | Succinate dehydrogenase flavoprotein subunit. | succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.990 |
BCUN_0189 | sucD | BCUN_0189 | BCUN_0802 | Succinate dehydrogenase flavoprotein subunit. | succinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.987 |
BCUN_0285 | BCUN_0188 | BCUN_0285 | BCUN_0188 | Aspartate ammonia-lyase. | Succinate dehydrogenase iron-sulfur protein. | 0.508 |
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