Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BCUN_0350 | aroC | BCUN_0350 | BCUN_0351 | Peptidase A24A, prepilin type IV. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.722 |
BCUN_0350 | aroK | BCUN_0350 | BCUN_0352 | Peptidase A24A, prepilin type IV. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.701 |
BCUN_0350 | aroQ | BCUN_0350 | BCUN_0353 | Peptidase A24A, prepilin type IV. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.614 |
BCUN_0354 | aroQ | BCUN_0354 | BCUN_0353 | Pullulanase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.473 |
BCUN_0501 | BCUN_0656 | BCUN_0501 | BCUN_0656 | Shikimate 5-dehydrogenase. | Chorismate mutase. | 0.605 |
BCUN_0501 | BCUN_0769 | BCUN_0501 | BCUN_0769 | Shikimate 5-dehydrogenase. | Anthranilate/para-aminobenzoate synthases component I. | 0.805 |
BCUN_0501 | aroA | BCUN_0501 | BCUN_0334 | Shikimate 5-dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.982 |
BCUN_0501 | aroC | BCUN_0501 | BCUN_0351 | Shikimate 5-dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.955 |
BCUN_0501 | aroK | BCUN_0501 | BCUN_0352 | Shikimate 5-dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.997 |
BCUN_0501 | aroQ | BCUN_0501 | BCUN_0353 | Shikimate 5-dehydrogenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.984 |
BCUN_0501 | trpC | BCUN_0501 | BCUN_0774 | Shikimate 5-dehydrogenase. | Bifunctional tryptophan synthase subunit beta/indole-3-glycerol phosphate synthase; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine; Belongs to the TrpC family. | 0.816 |
BCUN_0656 | BCUN_0501 | BCUN_0656 | BCUN_0501 | Chorismate mutase. | Shikimate 5-dehydrogenase. | 0.605 |
BCUN_0656 | BCUN_0769 | BCUN_0656 | BCUN_0769 | Chorismate mutase. | Anthranilate/para-aminobenzoate synthases component I. | 0.918 |
BCUN_0656 | aroA | BCUN_0656 | BCUN_0334 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.832 |
BCUN_0656 | aroC | BCUN_0656 | BCUN_0351 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.963 |
BCUN_0656 | aroK | BCUN_0656 | BCUN_0352 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.924 |
BCUN_0656 | aroQ | BCUN_0656 | BCUN_0353 | Chorismate mutase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.519 |
BCUN_0656 | trpC | BCUN_0656 | BCUN_0774 | Chorismate mutase. | Bifunctional tryptophan synthase subunit beta/indole-3-glycerol phosphate synthase; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine; Belongs to the TrpC family. | 0.779 |
BCUN_0769 | BCUN_0501 | BCUN_0769 | BCUN_0501 | Anthranilate/para-aminobenzoate synthases component I. | Shikimate 5-dehydrogenase. | 0.805 |
BCUN_0769 | BCUN_0656 | BCUN_0769 | BCUN_0656 | Anthranilate/para-aminobenzoate synthases component I. | Chorismate mutase. | 0.918 |
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