STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_0654NADH-dependent flavin oxidoreductase YqjM. (367 aa)    
Predicted Functional Partners:
BCUN_0462
Glutamate synthase.
    
 0.915
BCUN_0314
CarD family transcriptional regulator.
   
    0.604
BCUN_1972
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.524
BCUN_0916
Dihydrolipoyl dehydrogenase.
  
 
 0.507
BCUN_1747
Fumarylacetoacetate (FAA) hydrolase.
    
 0.462
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.461
BCUN_0753
Inosine 5-monophosphate dehydrogenase.
    
 0.460
BCUN_0189
Succinate dehydrogenase flavoprotein subunit.
   
 0.457
BCUN_1260
NADH oxidase.
  
 
 0.454
BCUN_1322
Cold-shock DNA-binding domain protein.
   
    0.453
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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