STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_0931T/U mismatch-specific DNA glycosylase. (197 aa)    
Predicted Functional Partners:
BCUN_0643
A/G-specific adenine glycosylase.
    
 0.832
BCUN_0930
Phospholipase/carboxylesterase superfamily protein.
       0.766
BCUN_0113
Exodeoxyribonuclease.
  
 
 0.688
BCUN_0932
ABC transporter domain-containing protein.
       0.538
BCUN_0929
Putative nucleotidyltransferase domain protein.
       0.505
BCUN_0933
ABC transporter permease.
       0.485
BCUN_1123
Putative LPXTG-motif protein cell wall anchor domain protein.
  
     0.420
BCUN_0821
LPXTG-motif cell wall anchor domain protein.
  
     0.416
BCUN_1751
FctX protein.
  
     0.414
BCUN_1103
Putative LPXTG-motif protein cell wall anchor domain protein.
  
     0.407
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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