STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_1024ATP-binding protein. (75 aa)    
Predicted Functional Partners:
BCUN_1025
Aminoglycoside phosphotransferase.
 
     0.808
BCUN_1414
Hypothetical protein.
  
     0.678
BCUN_1073
Thymidine phosphorylase.
  
     0.667
BCUN_1026
DNA helicase II.
       0.594
BCUN_1987
ADP-ribose pyrophosphatase.
  
     0.535
BCUN_1653
Permease.
  
     0.534
BCUN_1743
Orotate phosphoribosyltransferase.
  
     0.533
BCUN_0157
Type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.531
BCUN_0039
16S RNA methylase RsmC.
  
     0.514
BCUN_2201
Single-strand binding protein.
  
     0.514
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.