Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BCUN_0273 | BCUN_1132 | BCUN_0273 | BCUN_1132 | ATP-dependent RNA helicase. | Ribonuclease G. | 0.887 |
BCUN_0273 | eno | BCUN_0273 | BCUN_0292 | ATP-dependent RNA helicase. | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.773 |
BCUN_0273 | pnp | BCUN_0273 | BCUN_1204 | ATP-dependent RNA helicase. | Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.961 |
BCUN_0273 | rho | BCUN_0273 | BCUN_1734 | ATP-dependent RNA helicase. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.403 |
BCUN_0273 | rplC | BCUN_0273 | BCUN_1969 | ATP-dependent RNA helicase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.973 |
BCUN_0273 | rpoA | BCUN_0273 | BCUN_1533 | ATP-dependent RNA helicase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.755 |
BCUN_0273 | rpoB | BCUN_0273 | BCUN_0641 | ATP-dependent RNA helicase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.704 |
BCUN_0273 | rpsO | BCUN_0273 | BCUN_1203 | ATP-dependent RNA helicase. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.860 |
BCUN_1132 | BCUN_0273 | BCUN_1132 | BCUN_0273 | Ribonuclease G. | ATP-dependent RNA helicase. | 0.887 |
BCUN_1132 | BCUN_1424 | BCUN_1132 | BCUN_1424 | Ribonuclease G. | RNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.578 |
BCUN_1132 | eno | BCUN_1132 | BCUN_0292 | Ribonuclease G. | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.896 |
BCUN_1132 | pnp | BCUN_1132 | BCUN_1204 | Ribonuclease G. | Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.998 |
BCUN_1132 | rho | BCUN_1132 | BCUN_1734 | Ribonuclease G. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.435 |
BCUN_1424 | BCUN_1132 | BCUN_1424 | BCUN_1132 | RNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Ribonuclease G. | 0.578 |
BCUN_1424 | eno | BCUN_1424 | BCUN_0292 | RNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.678 |
BCUN_1424 | pnp | BCUN_1424 | BCUN_1204 | RNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.862 |
eno | BCUN_0273 | BCUN_0292 | BCUN_0273 | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | ATP-dependent RNA helicase. | 0.773 |
eno | BCUN_1132 | BCUN_0292 | BCUN_1132 | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Ribonuclease G. | 0.896 |
eno | BCUN_1424 | BCUN_0292 | BCUN_1424 | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | RNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.678 |
eno | pnp | BCUN_0292 | BCUN_1204 | Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.884 |
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