STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_1391PglZ domain protein. (872 aa)    
Predicted Functional Partners:
BCUN_1392
Alkaline phosphatase domain-containing protein.
 
     0.961
BCUN_0273
ATP-dependent RNA helicase.
  
 0.923
BCUN_1390
Type IIS restriction enzyme.
 
     0.899
BCUN_1389
Hypothetical protein.
   
   0.881
BCUN_0038
HrpA protein.
   
 0.878
BCUN_1388
Putative ATP-binding protein.
 
    0.859
BCUN_1387
Putative cytoplasmic protein.
 
     0.849
BCUN_1386
Hypothetical protein.
 
     0.844
BCUN_1276
GTP-binding protein.
   
   0.832
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.828
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.