STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_1465Hypothetical protein. (123 aa)    
Predicted Functional Partners:
BCUN_1464
tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.703
BCUN_1466
Cytosolic protein.
 
     0.582
BCUN_0114
Cytosolic protein.
  
     0.544
BCUN_0159
Hypothetical protein.
  
     0.535
BCUN_0158
DNA binding protein.
  
     0.513
BCUN_0751
ABC-type xylose transport system protein.
  
     0.496
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.492
BCUN_0631
ATP-dependent DNA helicase, UvrD/REP family.
  
     0.486
BCUN_2178
Phosphoglycerate mutase.
  
     0.483
BCUN_1212
Large Ala/Glu-rich protein.
  
     0.470
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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