STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_1561Phage shock protein C, PspC. (622 aa)    
Predicted Functional Partners:
BCUN_1560
NarX.
 
    0.943
BCUN_1821
Phage shock protein A-like protein.
  
 
 0.939
BCUN_1559
Response regulator of two-component system.
 
  
 0.831
BCUN_1562
Hypothetical protein.
       0.706
BCUN_0343
Integral membrane protein.
  
    0.676
BCUN_0311
Sensor protein.
   
   0.555
BCUN_1659
Hypothetical protein.
  
    0.520
BCUN_1180
Pre-pilin peptidase.
  
     0.491
BCUN_1555
Dipeptidylaminopeptidase/acylaminoacyl- peptidase.
 
     0.485
BCUN_1359
DO serine protease.
  
  
 0.476
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.