STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_1945GntR family transcriptional regulator. (249 aa)    
Predicted Functional Partners:
BCUN_1944
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.874
BCUN_1552
PTS system glucose-specific EIIBCA component.
  
 
 0.803
BCUN_1069
AraC family transcriptional regulator.
 
  
 0.571
BCUN_1942
Phosphotransferase enzyme family protein.
 
     0.549
BCUN_1943
Ethanolamine transporter.
       0.524
BCUN_0036
Transcriptional regulator, GntR family.
  
    0.492
BCUN_0025
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.489
BCUN_0337
Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase.
    
  0.413
BCUN_0304
Transcriptional regulator.
   
    0.400
BCUN_0780
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 
  0.400
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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