Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BCUN_2091ABC transporter permease. (309 aa)    
Predicted Functional Partners:
BCUN_2090
Sugar ABC superfamily ATP binding cassette transporter, membrane protein.
 
  0.996
BCUN_2089
Sugars ABC transporter substrate-binding protein.
 
  
  0.987
BCUN_1640
Sugar ABC superfamily ATP binding cassette transporter, membrane protein.
 
 0.981
BCUN_1415
Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.976
BCUN_2074
Sugar ABC transporter substrate-binding protein.
 
  0.972
BCUN_1641
Sugar ABC superfamily ATP binding cassette transporter, binding protein.
 
 0.954
BCUN_1703
Sugar ABC transporter permease.
 
 0.953
BCUN_2097
ABC transporter, permease protein.
  
  
 
0.909
BCUN_0671
Sugar ABC transporter substrate-binding protein.
 
 0.893
BCUN_1639
Sugar ABC superfamily ATP binding cassette transporter, binding protein.
  
  
 
0.892
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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