STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_2134Galactofuranosyltransferase. (634 aa)    
Predicted Functional Partners:
BCUN_2135
Polysaccharide ABC transporter permease.
 
  
 0.830
BCUN_2141
Glycosyl transferase family 2 protein.
 
  
 0.828
BCUN_2136
Polysaccharide ABC transporter, ATP-binding protein.
 
  
 0.795
BCUN_2139
dTDP-rhamnosyl transferase RfbF.
 
  
 
0.740
BCUN_2143
UDP-galactopyranose mutase.
 
  
 0.680
BCUN_1936
Collagen-binding protein, peptidoglycan linked protein (LPXTG motif).
  
 
   0.644
BCUN_1980
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.497
BCUN_2137
Glycosyl transferase family protein.
       0.462
BCUN_2150
Galactosyl transferase CpsD.
  
 
 0.432
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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