STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCUN_2136Polysaccharide ABC transporter, ATP-binding protein. (451 aa)    
Predicted Functional Partners:
BCUN_2135
Polysaccharide ABC transporter permease.
 
 0.999
BCUN_2134
Galactofuranosyltransferase.
 
  
 0.795
BCUN_0310
Amidophosphoribosyl transferase-like protein.
   
    0.674
BCUN_2137
Glycosyl transferase family protein.
       0.667
BCUN_2142
Glycosyltransferase.
  
  
 0.549
BCUN_1980
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
     
 0.544
BCUN_2141
Glycosyl transferase family 2 protein.
  
  
 0.536
BCUN_2152
Glycosyl transferase family protein.
 
  
 0.519
xerC-2
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.457
BCUN_2139
dTDP-rhamnosyl transferase RfbF.
  
  
 0.432
Your Current Organism:
Bifidobacterium cuniculi
NCBI taxonomy Id: 1688
Other names: AS 1.2239, ATCC 27916, B. cuniculi, BCRC 14672, CCRC 14672, CCRC:14672, CCUG 24610, CIP 103379, DSM 20435, LMG 10738, LMG:10738, strain RA93
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