STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001407835_01624Unannotated protein. (244 aa)    
Predicted Functional Partners:
GCA_001407835_01623
Unannotated protein.
 
 
 0.999
GCA_001407835_01635
Unannotated protein.
 
 
 0.992
GCA_001407835_01618
Unannotated protein.
  
  
 0.922
GCA_001407835_00946
Unannotated protein.
  
 
 0.895
GCA_001407835_00009
Unannotated protein.
  
 
 0.879
GCA_001407835_01622
Unannotated protein.
 
  
 0.862
GCA_001407835_01627
Unannotated protein.
 
     0.826
GCA_001407835_01617
Unannotated protein.
  
    0.814
GCA_001407835_01616
Unannotated protein.
       0.812
GCA_001407835_01619
Unannotated protein.
       0.802
Your Current Organism:
Lagierella massiliensis
NCBI taxonomy Id: 1689303
Other names: CSUR P2012, L. massiliensis, Peptoniphilaceae bacterium SIT14, strain SIT14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.